Fig. 5
From: Discovery of optimal cell type classification marker genes from single cell RNA sequencing data
NS-Forest marker genes compared to other published HLCA marker gene lists. A Dotplot of the 122 NS-Forest marker genes on HLCA core cell types. B Dendrogram of 61 ann_finest_level cell types from HLCA core dataset corresponding to the rows in (A), generated before preprocessing and by the scanpy package (scanpy.tl.dendrogram). C Comparing the number of cell types, number of markers, number of unique markers, median F-beta score, median PPV (precision), median recall, and median On-Target Fraction for the NS-Forest, HLCA, CellRef, ASCT + B, and Azimuth marker lists. D-G Boxplots of F-beta score, PPV (precision), recall, and On-Target Fraction for the 13 cell types commonly characterized by all methods. H–K Boxplots of F-beta score, PPV (precision), recall, and On-Target Fraction for all available cell types across methods