Table 1 Comparison of runtime and number of genes that passed the BinaryFirst filtering criterion between different BinaryFirst configurations
From: Discovery of optimal cell type classification marker genes from single cell RNA sequencing data
Dataset | BinaryFirst configuration | Time to run (hrs:min:secs) | Ratio to run time of v2.0/3.9 | Average fraction of genes left per cluster after BinaryFirst filtering (n/total) |
|---|---|---|---|---|
Human MTG | NS-Forest v2.0/3.9/BinaryFirst: mild (median) | 00:55:33 | 1 | 1 (13,945/13945) |
BinaryFirst: moderate (mean + 1 std. dev.) | 00:18:10 | 0.325 | 0.164 (2292.47/13945) | |
BinaryFirst: high (mean + 2 std. dev.) | 00:10:58 | 0.196 | 0.073 (1022.99/13945) | |
Kidney | NS-Forest v2.0/3.9/BinaryFirst: mild (median) | 68:17:37 | 1 | 1 (33,920/33920) |
BinaryFirst: moderate (mean + 1 std. dev.) | 06:49:36 | 0.100 | 0.013 (447.79/33920) | |
BinaryFirst: high (mean + 2 std. dev.) | 06:46:40 | 0.100 | 0.013 (446.39/33920) | |
Lung: L5 | NS-Forest v2.0/3.9/BinaryFirst: mild (median) | 02:37:58 | 1 | 1 (29,800/29800) |
BinaryFirst: moderate (mean + 1 std. dev.) | 00:44:56 | 0.284 | 0.021 (639.61/29800) | |
BinaryFirst: high (mean + 2 std. dev.) | 00:41:16 | 0.261 | 0.020 (609.87/29800) |